Ishihama, Tomohiro: search on Z-Library

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1

RutR is the uracil/thymine-sensing master regulator of a set of genes for synthesis and degradation of pyrimidines

Tomohiro Shimada, Kiyo Hirao, Ayako Kori, Kaneyoshi Yamamoto, Akira Ishihama

Journal:

Molecular Microbiology

Year:

2007

Language:

english

File:

PDF, 595 KB

english, 2007

2

Novel roles of LeuO in transcription regulation of E. coli genome: antagonistic interplay with the universal silencer H-NS

Tomohiro Shimada, Arnaud Bridier, Romain Briandet, Akira Ishihama

Journal:

Molecular Microbiology

Year:

2011

Language:

english

File:

PDF, 1.19 MB

english, 2011

3

The role of the omega subunit of RNA polymerase in expression of the relA gene in Escherichia coli

Dipankar Chatterji, Yoshito Ogawa, Tomohiro Shimada, Akira Ishihama

Journal:

FEMS Microbiology Letters

Year:

2007

Language:

english

File:

PDF, 203 KB

english, 2007

4

Systematic search for the Cra-binding promoters using genomic SELEX system

Tomohiro Shimada, Nobuyuki Fujita, Michihisa Maeda, Akira Ishihama

Journal:

Year:

2005

Language:

english

File:

PDF, 314 KB

english, 2005

5

A novel regulator RcdA of the csgD gene encoding the master regulator of biofilm formation in Escherichia coli

Shimada, Tomohiro, Katayama, Yasunori, Kawakita, Shuichi, Ogasawara, Hiroshi, Nakano, Masahiro, Yamamoto, Kaneyoshi, Ishihama, Akira

Journal:

MicrobiologyOpen

Year:

2012

Language:

english

File:

PDF, 2.48 MB

english, 2012

6

Novel regulator PgrR for switch control of peptidoglycan recycling in Escherichia coli

Shimada, Tomohiro, Yamazaki, Kaoru, Ishihama, Akira

Journal:

Year:

2013

Language:

english

File:

PDF, 1.50 MB

english, 2013

7

Involvement of the ribose operon repressor RbsR in regulation of purine nucleotide synthesis in Escherichia coli

Shimada, Tomohiro, Kori, Ayako, Ishihama, Akira

Journal:

FEMS Microbiology Letters

Year:

2013

Language:

english

File:

PDF, 458 KB

english, 2013

8

p38-Mediated phosphorylation of Eps15 endocytic adaptor protein

Zhou, Yue, Tanaka, Tomohiro, Sugiyama, Naoyuki, Yokoyama, Satoru, Kawasaki, Yuki, Sakuma, Tsutomu, Ishihama, Yasushi, Saiki, Ikuo, Sakurai, Hiroaki

Journal:

Year:

2014

Language:

english

File:

PDF, 889 KB

english, 2014

9

A convergent conical algorithm with\(\omega \)-bisection for concave minimization

Kuno, Takahito, Ishihama, Tomohiro

Journal:

Journal of Global Optimization

Year:

2015

Language:

english

File:

PDF, 448 KB

english, 2015

10

[IEEE 2007 International Symposium on Micro-NanoMechatronics and Human Science - Nagoya, Japan (2007.11.11-2007.11.14)] 2007 International Symposium on Micro-NanoMechatronics and Human Science - Multi-Scale Genetics of Transcription Network: Understanding the Regulatory Roles of All 300 Transcription Factors from a Single Organism Escherichia coli

Ishihama, Akira, Ogasawara, Hiroshi, Shimada, Tomohiro, Teramoto, Jun, Hasegawa, Akiko, Umezawa, Yoshimasa, Yabuki, Koshiro, Ishida, Yuji, Inaba, Tatsuya, Kori, Ayako, Yamada, Kayoko, Kitai, Yuichi, K

Year:

2007

Language:

english

File:

PDF, 3.10 MB

english, 2007

11

[IEEE 2009 International Symposium on Micro-NanoMechatronics and Human Science (MHS) - Nagoya, Japan (2009.11.9-2009.11.11)] 2009 International Symposium on Micro-NanoMechatronics and Human Science - Genomic SELEX for the genome-wide search of regulation targets by transcription factors: SELEX-clos and SELEX-chip procedures

Shimada, Tomohiro, Fujita, Nobuyuki, Yamamoto, Kaneyoshi, Ishihama, Akira

Year:

2009

Language:

english

File:

PDF, 781 KB

english, 2009

12

[IEEE 2009 International Symposium on Micro-NanoMechatronics and Human Science (MHS) - Nagoya, Japan (2009.11.9-2009.11.11)] 2009 International Symposium on Micro-NanoMechatronics and Human Science - Single live-bacterial cell assay of promoter activity and regulation: Escherichia coli gcl promoter

Teramoto, Jun, Yamanishi, Yoko, Magdy, El-Shimy H., Hasegawa, Akiko, Nakajima, Masahiro, Shimada, Tomohiro, Arai, Fumihito, Fukuda, Toshio, Ishihama, Akira

Year:

2009

Language:

english

File:

PDF, 349 KB

english, 2009

13

[IEEE 2006 IEEE International Symposium on MicroNanoMechanical and Human Science - Nagoya University, Nagoya, Japan (2006.11.5-2006.11.8)] 2006 IEEE International Symposium on MicroNanoMechanical and Human Science - Multi-Scale Genetics towards Understanding the Hierarchy of Transcription Factor Network in Genome Regulation

Ishihama, Akira, Ogasawara, Hiroshi, Shimada, Tomohiro, Teramoto, Jun, Hasegawa, Akiko, Umezawa, Yoshimasa, Yabuki, Koshiro, Ishida, Yuji, Inaba, Tatsuya, Matsui, Masaru, Kitai, Yuichi, Kori, Ayako, Y

Year:

2006

Language:

english

File:

PDF, 81 KB

english, 2006

14

Roles of cell division control factor SdiA: recognition of quorum sensing signals and modulation of transcription regulation targets

Shimada, Tomohiro, Shimada, Kaori, Matsui, Makoto, Kitai, Yuichi, Igarashi, Jun, Suga, Hiroaki, Ishihama, Akira

Journal:

Year:

2014

Language:

english

File:

PDF, 2.01 MB

english, 2014

15

[IEEE 2008 International Symposium on Micro-NanoMechatronics and Human Science (MHS) - Nagoya, Japan (2008.11.6-2008.11.9)] 2008 International Symposium on Micro-NanoMechatronics and Human Science - Comprehensive analysis for the recognition sequences of DNA-binding transcription factors within the E. coli genome using the newly developed "Promoter Chip"

Yamamoto, Kaneyoshi, Shimada, Tomohiro, Ishihama, Akira

Year:

2008

Language:

english

File:

PDF, 2.49 MB

english, 2008

16

[IEEE 2011 International Symposium on Micro-NanoMechatronics and Human Science (MHS) - Nagoya, Japan (2011.11.6-2011.11.9)] 2011 International Symposium on Micro-NanoMechatronics and Human Science - Single molecule analysis of transcription factor-DNA complexes using atomic force microscopy

Nakano, Masahiro, Teramoto, Jun, Shimada, Tomohiro, Yamamoto, Kaneyoshi, Ishihama, Akira

Year:

2011

Language:

english

File:

PDF, 747 KB

english, 2011

17

Involvement of cAMP-CRP in transcription activation and repression of the pck gene encoding PEP carboxykinase, the key enzyme of gluconeogenesis

Nakano, Masahiro, Ogasawara, Hiroshi, Shimada, Tomohiro, Yamamoto, Kaneyoshi, Ishihama, Akira

Journal:

FEMS Microbiology Letters

Year:

2014

Language:

english

File:

PDF, 480 KB

english, 2014

18

A generalization of\(\omega \)-subdivision ensuring convergence of the simplicial algorithm

Kuno, Takahito, Ishihama, Tomohiro

Journal:

Computational Optimization and Applications

Year:

2016

Language:

english

File:

PDF, 606 KB

english, 2016

19

Transcription profile of Escherichia coli : genomic SELEX search for regulatory targets of transcription factors

Ishihama, Akira, Shimada, Tomohiro, Yamazaki, Yukiko

Journal:

Nucleic Acids Research

Year:

2016

Language:

english

File:

PDF, 3.44 MB

english, 2016

20

Expanded roles of two-component response regulator OmpR in Escherichia coli : genomic SELEX search for novel regulation targets

Shimada, Tomohiro, Takada, Hiraku, Yamamoto, Kaneyoshi, Ishihama, Akira

Journal:

Year:

2015

Language:

english

File:

PDF, 1.13 MB

english, 2015

21

Measurement of Anti-Factor Xa Activity in Patients on Apixaban for Non-Valvular Atrial Fibrillation

Osanai, Hiroyuki, Ajioka, Masayoshi, Masutomi, Tomohiro, Kuwayama, Tasuku, Ishihama, Sota, Sakamato, Yusuke, Otaka, Naoya, Sakaguchi, Teruhiro, Inoue, Yosuke, Kanbara, Takahiro, Nakashima, Yoshihito,

Journal:

Circulation Journal

Year:

2015

Language:

english

File:

PDF, 1.01 MB

english, 2015

22

Distribution of Anti-Factor Xa Activity in Patients on Edoxaban Therapy for Non-Valvular Atrial Fibrillation

Osanai, Hiroyuki, Ajioka, Masayoshi, Masutomi, Tomohiro, Kuwayama, Tasuku, Ishihama, Sota, Takahashi, Maki, Kanbara, Takahiro, Inoue, Yosuke, Nakashima, Yoshihito, Asano, Hiroshi, Sakai, Kazuyoshi

Journal:

Circulation Journal

Year:

2016

Language:

english

File:

PDF, 349 KB

english, 2016

23

A structural sketch of RcdA, a transcription factor controlling the master regulator of biofilm formation

Sugino, Hirotaka, Usui, Takanori, Shimada, Tomohiro, Nakano, Masahiro, Ogasawara, Hiroshi, Ishihama, Akira, Hirata, Akira

Journal:

Year:

2017

Language:

english

File:

PDF, 821 KB

english, 2017

24

Regulatory role of XynR (YagI) in catabolism of xylonate in Escherichia coli K-12

Shimada, Tomohiro, Momiyama, Eri, Yamanaka, Yuki, Watanabe, Hiroki, Yamamoto, Kaneyoshi, Ishihama, Akira

Journal:

FEMS Microbiology Letters

Year:

2017

Language:

english

File:

PDF, 1.03 MB

english, 2017

25

Single-target regulators form a minor group of transcription factors in Escherichia coli K-12

Shimada, Tomohiro, Ogasawara, Hiroshi, Ishihama, Akira

Journal:

Nucleic Acids Research

Year:

2018

Language:

english

File:

PDF, 9.93 MB

english, 2018

26

Strength and Regulation of Seven rRNA Promoters in Escherichia coli

Maeda, Michihisa, Shimada, Tomohiro, Ishihama, Akira, Semsey, Szabolcs

Journal:

Year:

2015

Language:

english

File:

PDF, 4.70 MB

english, 2015

27

Differential Regulation of rRNA and tRNA Transcription from the rRNA-tRNA Composite Operon in Escherichia coli

Takada, Hiraku, Shimada, Tomohiro, Dey, Debashish, Quyyum, M. Zuhaib, Nakano, Masahiro, Ishiguro, Akira, Yoshida, Hideji, Yamamoto, Kaneyoshi, Sen, Ranjan, Ishihama, Akira, Herman, Christophe

Journal:

Year:

2016

Language:

english

File:

PDF, 5.20 MB

english, 2016

28

Coordinated Hibernation of Transcriptional and Translational Apparatus during Growth Transition of Escherichia coli to Stationary Phase

Yoshida, Hideji, Shimada, Tomohiro, Ishihama, Akira, Cristea, Ileana M.

Journal:

Year:

2018

Language:

english

File:

PDF, 3.61 MB

english, 2018

29

Regulatory Role of Pyruvate-Sensing BtsSR in Biofilm Formation by Escherichia coli K-12

Ogasawara, Hiroshi, Ishizuka, Toshiyuki, Yamaji, Kotaro, Kato, Yuki, Shimada, Tomohiro, Ishihama, Akira

Journal:

FEMS Microbiology Letters

Year:

2019

Language:

english

File:

PDF, 1.81 MB

english, 2019

30

Coordinated Regulation of Rsd and RMF for Simultaneous Hibernation of Transcription Apparatus and Translation Machinery in Stationary-Phase Escherichia coli

Yoshida, Hideji, Wada, Akira, Shimada, Tomohiro, Maki, Yasushi, Ishihama, Akira

Journal:

Frontiers in Genetics

Year:

2019

Language:

english

File:

PDF, 4.17 MB

english, 2019

31

Regulatory Role of Pyruvate-Sensing BtsSR in Biofilm Formation by Escherichia coli K-12

Ogasawara, Hiroshi, Ishizuka, Toshiyuki, Yamaji, Kotaro, Kato, Yuki, Shimada, Tomohiro, Ishihama, Akira

Journal:

FEMS Microbiology Letters

Year:

2019

File:

PDF, 1.81 MB

2019

32

Coordinated Regulation of Rsd and RMF for Simultaneous Hibernation of Transcription Apparatus and Translation Machinery in Stationary-Phase Escherichia coli

Yoshida, Hideji, Wada, Akira, Shimada, Tomohiro, Maki, Yasushi, Ishihama, Akira

Journal:

Frontiers in Genetics

Year:

2019

File:

PDF, 4.17 MB

2019